Enemy of the state
This is yet another Wolverine storyline which could follow closely the events of X-Men: Apocalypse by not staying true entirely to the comics. If Enemy of the state does happen, then we will see a brainwashed Logan fighting against friends and allies "“ you do the math and say how he'll end up brainwashed, after a movie featuring Apocalypse.
Sure enough, in this event, not all the X-Men would be killed "“ Professor X would be the one to replace Nick Fury from the comics and try to snap Logan back into his senses.

This would be one of the most fitting ends to Hugh Jackman's 17 years careers as the Wolverine "“ this would be an action-packed movie that would be a proper send-off to the character.
Until the role is recast "“ of course.
