Civil War villains

In the comics, we do know that the Civil War engulfed also the villains, who received pardons for their formed deeds if they chose a side. We don’t know if this will happen too in the adaptation.

But what we know is that HYDRA is alive and well, with Baron Zemo set to make his first appearance in the MCU. It isn’t too hard to assume that this villain will side with Iron Man during the Civil War, but in order to pursue his own interests.

There is one more reason why he would do that. During the events depicted in the Winter Soldier, the plan of HYDRA included was based on finding out who the major threats are. Doesn’t the Registration Act do the same thing?